load_clintox#

skfp.datasets.moleculenet.load_clintox(data_dir: str | PathLike | None = None, as_frame: bool = False, verbose: bool = False) → DataFrame | tuple[list[str]] | ndarray#

Load and return the ClinTox dataset.

The task is to predict drug approval viability, by predicting clinical trial toxicity and final FDA approval status [1]. Both tasks are binary.

Tasks

2

Task type

multitask classification

Total samples

1477

Recommended split

scaffold

Recommended metric

AUROC
Parameters:

  • data_dir ({None, str, path-like}, default=None) – Path to the root data directory. If None, currently set scikit-learn directory is used, by default $HOME/scikit_learn_data.

  • as_frame (bool, default=False) – If True, returns the raw DataFrame with columns “SMILES” and 2 label columns, FDA approval and clinical trial toxicity. Otherwise, returns SMILES as list of strings, and labels as a NumPy array (2D integer array).

  • verbose (bool, default=False) – If True, progress bar will be shown for downloading or loading files.

Returns:

data – Depending on the as_frame argument, one of: - Pandas DataFrame with columns “SMILES” and 2 label columns - tuple of: list of strings (SMILES), NumPy array (labels)

Return type:

pd.DataFrame or tuple(list[str], np.ndarray)

References