Distances and similarities

Functions for computing distance and similarity measures common in chemoinformatics.

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Distances

Single vectors:

braun_blanquet_binary_distance	Braun-Blanquet distance for vectors of binary values.
ct4_binary_distance	Consonni–Todeschini 4 distance for vectors of binary values.
ct4_count_distance	Consonni–Todeschini distance for vectors of count values.
dice_binary_distance	Dice distance for vectors of binary values.
dice_count_distance	Dice distance for vectors of count values.
fraggle_distance	Fraggle distance between molecules.
harris_lahey_binary_distance	Harris-Lahey distance for vectors of binary values.
kulczynski_binary_distance	Kulczynski distance for vectors of binary values.
mcconnaughey_binary_distance	McConnaughey distance for vectors of binary values.
rand_binary_distance	Rand distance for vectors of binary values.
rogot_goldberg_binary_distance	Rogot-Goldberg distance for vectors of binary values.
russell_binary_distance	Russell distance for vectors of binary values.
simpson_binary_distance	Simpson distance for vectors of binary values.
sokal_sneath_2_binary_distance	Sokal-Sneath distance 2 for vectors of binary values.
tanimoto_binary_distance	Tanimoto distance for vectors of binary values.
tanimoto_count_distance	Tanimoto distance for vectors of count values.

Bulk functions for matrices (pairwise distances):

bulk_braun_blanquet_binary_distance	Bulk Braun-Blanquet distance for vectors of binary values.
bulk_ct4_binary_distance	Bulk Consonni–Todeschini 4 distance for vectors of binary values.
bulk_ct4_count_distance	Bulk Consonni–Todeschini 4 distance for vectors of count values.
bulk_dice_binary_distance	Bulk Dice distance for vectors of binary values.
bulk_dice_count_distance	Bulk Dice distance for vectors of count values.
bulk_fraggle_distance	Bulk Fraggle distance.
bulk_harris_lahey_binary_distance	Bulk Harris-Lahey distance for vectors of binary values.
bulk_kulczynski_binary_distance	Bulk Kulczynski distance for vectors of binary values.
bulk_mcconnaughey_binary_distance	Bulk McConnaughey distance for vectors of binary values.
bulk_rand_binary_distance	Bulk Rand distance for vectors of binary values.
bulk_rogot_goldberg_binary_distance	Bulk Rogot-Goldberg distance for vectors of binary values.
bulk_russell_binary_distance	Bulk Russell distance for vectors of binary values.
bulk_simpson_binary_distance	Bulk Simpson distance for vectors of binary values.
bulk_sokal_sneath_2_binary_distance	Bulk Sokal-Sneath distance 2 for vectors of binary values.
bulk_tanimoto_binary_distance	Bulk Tanimoto distance for vectors of binary values.
bulk_tanimoto_count_distance	Bulk Tanimoto distance for vectors of count values.

Similarities

Single vectors:

braun_blanquet_binary_similarity	Braun-Blanquet similarity for vectors of binary values.
ct4_binary_similarity	Consonni–Todeschini 4 similarity for vectors of binary values.
ct4_count_similarity	Consonni–Todeschini 4 similarity for vectors of count values.
dice_binary_similarity	Dice similarity for vectors of binary values.
dice_count_similarity	Dice similarity for vectors of count values.
fraggle_similarity	Fraggle similarity between molecules.
harris_lahey_binary_similarity	Harris-Lahey similarity for vectors of binary values.
kulczynski_binary_similarity	Kulczynski similarity for vectors of binary values.
mcconnaughey_binary_similarity	McConnaughey similarity for vectors of binary values.
rand_binary_similarity	Rand similarity for vectors of binary values.
rogot_goldberg_binary_similarity	Rogot-Goldberg similarity for vectors of binary values.
russell_binary_similarity	Russell similarity for vectors of binary values.
simpson_binary_similarity	Simpson similarity for vectors of binary values.
sokal_sneath_2_binary_similarity	Sokal-Sneath similarity 2 for vectors of binary values.
tanimoto_binary_similarity	Tanimoto similarity for vectors of binary values.
tanimoto_count_similarity	Tanimoto similarity for vectors of count values.

Bulk functions for matrices (pairwise similarities):

bulk_braun_blanquet_binary_similarity	Bulk Braun-Blanquet similarity for binary matrices.
bulk_ct4_binary_similarity	Bulk Consonni–Todeschini 4 similarity for binary matrices.
bulk_ct4_count_similarity	Bulk Consonni–Todeschini 4 similarity for count matrices.
bulk_dice_binary_similarity	Bulk Dice similarity for binary matrices.
bulk_dice_count_similarity	Bulk Dice similarity for count matrices.
bulk_fraggle_similarity	Bulk Fraggle similarity.
bulk_harris_lahey_binary_similarity	Bulk Harris-Lahey similarity for binary matrices.
bulk_kulczynski_binary_similarity	Bulk Kulczynski similarity for binary matrices.
bulk_mcconnaughey_binary_similarity	Bulk McConnaughey similarity for binary matrices.
bulk_rand_binary_similarity	Bulk Rand similarity for binary matrices.
bulk_russell_binary_similarity	Bulk Russell similarity for binary matrices.
bulk_rogot_goldberg_binary_similarity	Bulk Rogot-Goldberg similarity for binary matrices.
bulk_simpson_binary_similarity	Bulk Simpson similarity for binary matrices.
bulk_sokal_sneath_2_binary_similarity	Bulk Sokal-Sneath similarity 2 for binary matrices.
bulk_tanimoto_binary_similarity	Bulk Tanimoto similarity for binary matrices.
bulk_tanimoto_count_similarity	Bulk Tanimoto similarity for count matrices.