load_cyp2c9_substrate_carbonmangels#
- skfp.datasets.tdc.adme.load_cyp2c9_substrate_carbonmangels(data_dir: str | PathLike | None = None, as_frame: bool = False, verbose: bool = False) DataFrame | tuple[list[str]] | ndarray #
Load the CYP2C9 subset of Substrate Carbon-Mangels dataset.
CYP2C9 plays a major role in the oxidation of both xenobiotic and endogenous compounds [1] [2] [3]. Substrates are drugs that are metabolized by the enzyme. The task is to predict whether a molecule is a substrate to CYP2C9.
All Substrate Carbon-Mangels subsets:
This dataset is a part of “metabolism” subset of ADME tasks.
Tasks
1
Task type
classification
Total samples
669
Recommended split
scaffold
Recommended metric
AUPRC
- Parameters:
data_dir ({None, str, path-like}, default=None) – Path to the root data directory. If
None
, currently set scikit-learn directory is used, by default $HOME/scikit_learn_data.as_frame (bool, default=False) – If True, returns the raw DataFrame with columns: “SMILES”, “label”. Otherwise, returns SMILES as list of strings, and labels as a NumPy array (1D integer binary vector).
verbose (bool, default=False) – If True, progress bar will be shown for downloading or loading files.
- Returns:
data – Depending on the
as_frame
argument, one of: - Pandas DataFrame with columns: “SMILES”, “label” - tuple of: list of strings (SMILES), NumPy array (labels)- Return type:
pd.DataFrame or tuple(list[str], np.ndarray)
References