Preprocessing#

Classes for preprocessing molecules.


Reading and writing molecular formats:

MolFromAminoseqTransformer

Creates RDKit Mol objects from amino-acid sequence strings.

MolFromInchiTransformer

Creates RDKit Mol objects from InChI strings.

MolFromSDFTransformer

Creates RDKit Mol objects from SDF string or file.

MolFromSmilesTransformer

Creates RDKit Mol objects from SMILES strings.

MolToInchiTransformer

Creates InChI strings from RDKit Mol objects.

MolToSDFTransformer

Creates SDF file from RDKit Mol objects.

MolToSmilesTransformer

Creates SMILES strings from RDKit Mol objects.

Preprocessing classes:

ConformerGenerator

Generate molecule conformer.

MolStandardizer

Performs common molecule standardization operations.