TDC#


TDC molecular datasets

load_tdc_benchmark

Load the TDC benchmark datasets.

load_tdc_splits

Load pre-generated dataset splits from the TDC benchmark.

ADME dataset loaders#

adme.load_b3db_classification

Load the classification subset of Blood-Brain-Barrier dataset.

adme.load_b3db_regression

Load the regression subset of Blood-Brain-Barrier dataset.

adme.load_bioavailability_ma

Load the Bioavailability dataset.

adme.load_caco2_wang

Load the Caco-2 dataset.

adme.load_clearance_hepatocyte_az

Load the hepatocyte subset of Clearance AstraZeneca dataset.

adme.load_clearance_microsome_az

Load the microsome subset of Clearance AstraZeneca dataset.

adme.load_cyp1a2_veith

Load the CYP1A2 subset of CYP P450 Veith dataset.

adme.load_cyp2c19_veith

Load the CYP2C19 subset of CYP P450 Veith dataset.

adme.load_cyp2c9_substrate_carbonmangels

Load the CYP2C9 subset of Substrate Carbon-Mangels dataset.

adme.load_cyp2c9_veith

Load the CYP2C9 subset of CYP P450 Veith dataset.

adme.load_cyp2d6_substrate_carbonmangels

Load the CYP2D6 subset of Substrate Carbon-Mangels dataset.

adme.load_cyp2d6_veith

Load the CYP2D6 subset of CYP P450 Veith dataset.

adme.load_cyp3a4_substrate_carbonmangels

Load the CYP3A4 subset of Substrate Carbon-Mangels dataset.

adme.load_cyp3a4_veith

Load the CYP3A4 subset of CYP P450 Veith dataset.

adme.load_half_life_obach

Load the Half Life Obach dataset.

adme.load_hia_hou

Load the Human Intestinal Absorption dataset.

adme.load_hlm

Load the human subset of Human/Rat Liver Microsomal Stability dataset.

adme.load_pampa_approved_drugs

Load the approved drugs subset of PAMPA dataset.

adme.load_pampa_ncats

Load the NCATS subset of PAMPA dataset.

adme.load_pgp_broccatelli

Load the P-gp (P-glycoprotein) Inhibition dataset.

adme.load_ppbr_az

Load the PPBR (Plasma Protein Binding Rate) AstraZeneca dataset.

adme.load_rlm

Load the rat subset of Human/Rat Liver Microsomal Stability dataset.

adme.load_solubility_aqsoldb

Load the Solubility AqSolDB dataset.

adme.load_vdss_lombardo

Load the Volume of Distribution at Steady State dataset.

HTS dataset loaders#

hts.load_sarscov2_3clpro_diamond

Load the SARS-CoV-2 3CL Protease Diamond dataset.

hts.load_sarscov2_vitro_touret

Load the SARSCoV2 Vitro Touret dataset.

Toxicity dataset loaders#

tox.load_ames

Load the AMES dataset.

tox.load_dili

Load the DILI (Drug Induced Liver Injury) dataset.

tox.load_carcinogens_lagunin

Load the Carcinogens dataset.

tox.load_herg

Load the hERG blockers dataset.

tox.load_herg_central_at_1um

Load the 1 µM subset of hERG Central dataset.

tox.load_herg_central_at_10um

Load the 10 µM subset of hERG Central dataset.

tox.load_herg_central_inhib

Load the inhibition subset of hERG Central dataset.

tox.load_herg_karim

Load the hERG Karim dataset.

tox.load_ld50_zhu

Load the Acute Toxicity LD50 dataset.

tox.load_skin_reaction

Load the Skin Reaction dataset.