Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V | W | Z A AtomPairFingerprint (class in skfp.fingerprints) auroc_score() (in module skfp.metrics) AutocorrFingerprint (class in skfp.fingerprints) AvalonFingerprint (class in skfp.fingerprints) B BaseFilter (class in skfp.bases) BaseFingerprintTransformer (class in skfp.bases) BasePreprocessor (class in skfp.bases) BaseSubstructureFingerprint (class in skfp.bases) bedroc_score() (in module skfp.metrics) best_estimator_cv_ (skfp.model_selection.FingerprintEstimatorGridSearch attribute) (skfp.model_selection.FingerprintEstimatorRandomizedSearch attribute) best_fp_ (skfp.model_selection.FingerprintEstimatorGridSearch attribute) (skfp.model_selection.FingerprintEstimatorRandomizedSearch attribute) best_fp_array_ (skfp.model_selection.FingerprintEstimatorGridSearch attribute) (skfp.model_selection.FingerprintEstimatorRandomizedSearch attribute) best_fp_params_ (skfp.model_selection.FingerprintEstimatorGridSearch attribute) (skfp.model_selection.FingerprintEstimatorRandomizedSearch attribute) best_score_ (skfp.model_selection.FingerprintEstimatorGridSearch attribute) (skfp.model_selection.FingerprintEstimatorRandomizedSearch attribute) BeyondRo5Filter (class in skfp.filters) BMSFilter (class in skfp.filters) BrenkFilter (class in skfp.filters) butina_train_test_split() (in module skfp.model_selection) butina_train_valid_test_split() (in module skfp.model_selection) C ConformerGenerator (class in skfp.preprocessing) cv_results_ (skfp.model_selection.FingerprintEstimatorGridSearch attribute) (skfp.model_selection.FingerprintEstimatorRandomizedSearch attribute) D dice_binary_distance() (in module skfp.distances) dice_binary_similarity() (in module skfp.distances) dice_count_distance() (in module skfp.distances) dice_count_similarity() (in module skfp.distances) E E3FPFingerprint (class in skfp.fingerprints) ECFPFingerprint (class in skfp.fingerprints) ElectroShapeFingerprint (class in skfp.fingerprints) enrichment_factor() (in module skfp.metrics) ensure_mols() (in module skfp.utils) ensure_smiles() (in module skfp.utils) ERGFingerprint (class in skfp.fingerprints) EStateFingerprint (class in skfp.fingerprints) extract_pos_proba() (in module skfp.metrics) F FAF4DruglikeFilter (class in skfp.filters) FAF4LeadlikeFilter (class in skfp.filters) FingerprintEstimatorGridSearch (class in skfp.model_selection) FingerprintEstimatorRandomizedSearch (class in skfp.model_selection) fit() (skfp.bases.BaseFilter method) (skfp.bases.BaseFingerprintTransformer method) (skfp.bases.BasePreprocessor method) (skfp.bases.BaseSubstructureFingerprint method) (skfp.filters.BeyondRo5Filter method) (skfp.filters.BMSFilter method) (skfp.filters.BrenkFilter method) (skfp.filters.FAF4DruglikeFilter method) (skfp.filters.FAF4LeadlikeFilter method) (skfp.filters.GhoseFilter method) (skfp.filters.GlaxoFilter method) (skfp.filters.GSKFilter method) (skfp.filters.HaoFilter method) (skfp.filters.InpharmaticaFilter method) (skfp.filters.LINTFilter method) (skfp.filters.LipinskiFilter method) (skfp.filters.MLSMRFilter method) (skfp.filters.MolecularWeightFilter method) (skfp.filters.NIBRFilter method) (skfp.filters.NIHFilter method) (skfp.filters.OpreaFilter method) (skfp.filters.PAINSFilter method) (skfp.filters.PfizerFilter method) (skfp.filters.REOSFilter method) (skfp.filters.RuleOfFourFilter method) (skfp.filters.RuleOfThreeFilter method) (skfp.filters.RuleOfTwoFilter method) (skfp.filters.RuleOfVeberFilter method) (skfp.filters.RuleOfXuFilter method) (skfp.filters.SureChEMBLFilter method) (skfp.filters.TiceHerbicidesFilter method) (skfp.filters.TiceInsecticidesFilter method) (skfp.filters.ValenceDiscoveryFilter method) (skfp.filters.ZINCBasicFilter method) (skfp.filters.ZINCDruglikeFilter method) (skfp.fingerprints.AtomPairFingerprint method) (skfp.fingerprints.AutocorrFingerprint method) (skfp.fingerprints.AvalonFingerprint method) (skfp.fingerprints.E3FPFingerprint method) (skfp.fingerprints.ECFPFingerprint method) (skfp.fingerprints.ElectroShapeFingerprint method) (skfp.fingerprints.ERGFingerprint method) (skfp.fingerprints.EStateFingerprint method) (skfp.fingerprints.GETAWAYFingerprint method) (skfp.fingerprints.GhoseCrippenFingerprint method) (skfp.fingerprints.KlekotaRothFingerprint method) (skfp.fingerprints.LaggnerFingerprint method) (skfp.fingerprints.LayeredFingerprint method) (skfp.fingerprints.LingoFingerprint method) (skfp.fingerprints.MACCSFingerprint method) (skfp.fingerprints.MAPFingerprint method) (skfp.fingerprints.MHFPFingerprint method) (skfp.fingerprints.MordredFingerprint method) (skfp.fingerprints.MORSEFingerprint method) (skfp.fingerprints.MQNsFingerprint method) (skfp.fingerprints.PatternFingerprint method) (skfp.fingerprints.PharmacophoreFingerprint method) (skfp.fingerprints.PhysiochemicalPropertiesFingerprint method) (skfp.fingerprints.PubChemFingerprint method) (skfp.fingerprints.RDFFingerprint method) (skfp.fingerprints.RDKitFingerprint method) (skfp.fingerprints.SECFPFingerprint method) (skfp.fingerprints.TopologicalTorsionFingerprint method) (skfp.fingerprints.USRCATFingerprint method) (skfp.fingerprints.USRFingerprint method) (skfp.fingerprints.VSAFingerprint method) (skfp.fingerprints.WHIMFingerprint method) (skfp.preprocessing.ConformerGenerator method) (skfp.preprocessing.MolFromAminoseqTransformer method) (skfp.preprocessing.MolFromInchiTransformer method) (skfp.preprocessing.MolFromSDFTransformer method) (skfp.preprocessing.MolFromSmilesTransformer method) (skfp.preprocessing.MolStandardizer method) (skfp.preprocessing.MolToInchiTransformer method) (skfp.preprocessing.MolToSDFTransformer method) (skfp.preprocessing.MolToSmilesTransformer method) fit_transform() (skfp.bases.BaseFilter method) (skfp.bases.BaseFingerprintTransformer method) (skfp.bases.BasePreprocessor method) (skfp.bases.BaseSubstructureFingerprint method) (skfp.filters.BeyondRo5Filter method) (skfp.filters.BMSFilter method) (skfp.filters.BrenkFilter method) (skfp.filters.FAF4DruglikeFilter method) (skfp.filters.FAF4LeadlikeFilter method) (skfp.filters.GhoseFilter method) (skfp.filters.GlaxoFilter method) (skfp.filters.GSKFilter method) (skfp.filters.HaoFilter method) (skfp.filters.InpharmaticaFilter method) (skfp.filters.LINTFilter method) (skfp.filters.LipinskiFilter method) (skfp.filters.MLSMRFilter method) (skfp.filters.MolecularWeightFilter method) (skfp.filters.NIBRFilter method) (skfp.filters.NIHFilter method) (skfp.filters.OpreaFilter method) (skfp.filters.PAINSFilter method) (skfp.filters.PfizerFilter method) (skfp.filters.REOSFilter method) (skfp.filters.RuleOfFourFilter method) (skfp.filters.RuleOfThreeFilter method) (skfp.filters.RuleOfTwoFilter method) (skfp.filters.RuleOfVeberFilter method) (skfp.filters.RuleOfXuFilter method) (skfp.filters.SureChEMBLFilter method) (skfp.filters.TiceHerbicidesFilter method) (skfp.filters.TiceInsecticidesFilter method) (skfp.filters.ValenceDiscoveryFilter method) (skfp.filters.ZINCBasicFilter method) (skfp.filters.ZINCDruglikeFilter method) (skfp.fingerprints.AtomPairFingerprint method) (skfp.fingerprints.AutocorrFingerprint method) (skfp.fingerprints.AvalonFingerprint method) (skfp.fingerprints.E3FPFingerprint method) (skfp.fingerprints.ECFPFingerprint method) (skfp.fingerprints.ElectroShapeFingerprint method) (skfp.fingerprints.ERGFingerprint method) (skfp.fingerprints.EStateFingerprint method) (skfp.fingerprints.GETAWAYFingerprint method) (skfp.fingerprints.GhoseCrippenFingerprint method) (skfp.fingerprints.KlekotaRothFingerprint method) (skfp.fingerprints.LaggnerFingerprint method) (skfp.fingerprints.LayeredFingerprint method) (skfp.fingerprints.LingoFingerprint method) (skfp.fingerprints.MACCSFingerprint method) (skfp.fingerprints.MAPFingerprint method) (skfp.fingerprints.MHFPFingerprint method) (skfp.fingerprints.MordredFingerprint method) (skfp.fingerprints.MORSEFingerprint method) (skfp.fingerprints.MQNsFingerprint method) (skfp.fingerprints.PatternFingerprint method) (skfp.fingerprints.PharmacophoreFingerprint method) (skfp.fingerprints.PhysiochemicalPropertiesFingerprint method) (skfp.fingerprints.PubChemFingerprint method) (skfp.fingerprints.RDFFingerprint method) (skfp.fingerprints.RDKitFingerprint method) (skfp.fingerprints.SECFPFingerprint method) (skfp.fingerprints.TopologicalTorsionFingerprint method) (skfp.fingerprints.USRCATFingerprint method) (skfp.fingerprints.USRFingerprint method) (skfp.fingerprints.VSAFingerprint method) (skfp.fingerprints.WHIMFingerprint method) (skfp.preprocessing.ConformerGenerator method) (skfp.preprocessing.MolFromAminoseqTransformer method) (skfp.preprocessing.MolFromInchiTransformer method) (skfp.preprocessing.MolFromSDFTransformer method) (skfp.preprocessing.MolFromSmilesTransformer method) (skfp.preprocessing.MolStandardizer method) (skfp.preprocessing.MolToInchiTransformer method) (skfp.preprocessing.MolToSDFTransformer method) (skfp.preprocessing.MolToSmilesTransformer method) G get_feature_names_out() (skfp.bases.BaseFingerprintTransformer method) (skfp.bases.BaseSubstructureFingerprint method) (skfp.fingerprints.AtomPairFingerprint method) (skfp.fingerprints.AutocorrFingerprint method) (skfp.fingerprints.AvalonFingerprint method) (skfp.fingerprints.E3FPFingerprint method) (skfp.fingerprints.ECFPFingerprint method) (skfp.fingerprints.ElectroShapeFingerprint method) (skfp.fingerprints.ERGFingerprint method) (skfp.fingerprints.EStateFingerprint method) (skfp.fingerprints.GETAWAYFingerprint method) (skfp.fingerprints.GhoseCrippenFingerprint method) (skfp.fingerprints.KlekotaRothFingerprint method) (skfp.fingerprints.LaggnerFingerprint method) (skfp.fingerprints.LayeredFingerprint method) (skfp.fingerprints.LingoFingerprint method) (skfp.fingerprints.MACCSFingerprint method) (skfp.fingerprints.MAPFingerprint method) (skfp.fingerprints.MHFPFingerprint method) (skfp.fingerprints.MordredFingerprint method) (skfp.fingerprints.MORSEFingerprint method) (skfp.fingerprints.MQNsFingerprint method) (skfp.fingerprints.PatternFingerprint method) (skfp.fingerprints.PharmacophoreFingerprint method) (skfp.fingerprints.PhysiochemicalPropertiesFingerprint method) (skfp.fingerprints.PubChemFingerprint method) (skfp.fingerprints.RDFFingerprint method) (skfp.fingerprints.RDKitFingerprint method) (skfp.fingerprints.SECFPFingerprint method) (skfp.fingerprints.TopologicalTorsionFingerprint method) (skfp.fingerprints.USRCATFingerprint method) (skfp.fingerprints.USRFingerprint method) (skfp.fingerprints.VSAFingerprint method) (skfp.fingerprints.WHIMFingerprint method) get_metadata_routing() (skfp.bases.BaseFilter method) (skfp.bases.BaseFingerprintTransformer method) (skfp.bases.BasePreprocessor method) (skfp.bases.BaseSubstructureFingerprint method) (skfp.filters.BeyondRo5Filter method) (skfp.filters.BMSFilter method) (skfp.filters.BrenkFilter method) (skfp.filters.FAF4DruglikeFilter method) (skfp.filters.FAF4LeadlikeFilter method) (skfp.filters.GhoseFilter method) (skfp.filters.GlaxoFilter method) (skfp.filters.GSKFilter method) (skfp.filters.HaoFilter method) (skfp.filters.InpharmaticaFilter method) (skfp.filters.LINTFilter method) (skfp.filters.LipinskiFilter method) (skfp.filters.MLSMRFilter method) (skfp.filters.MolecularWeightFilter method) (skfp.filters.NIBRFilter method) (skfp.filters.NIHFilter method) (skfp.filters.OpreaFilter method) (skfp.filters.PAINSFilter method) (skfp.filters.PfizerFilter method) (skfp.filters.REOSFilter method) (skfp.filters.RuleOfFourFilter method) (skfp.filters.RuleOfThreeFilter method) (skfp.filters.RuleOfTwoFilter method) (skfp.filters.RuleOfVeberFilter method) (skfp.filters.RuleOfXuFilter method) (skfp.filters.SureChEMBLFilter method) (skfp.filters.TiceHerbicidesFilter method) (skfp.filters.TiceInsecticidesFilter method) (skfp.filters.ValenceDiscoveryFilter method) (skfp.filters.ZINCBasicFilter method) (skfp.filters.ZINCDruglikeFilter method) (skfp.fingerprints.AtomPairFingerprint method) (skfp.fingerprints.AutocorrFingerprint method) (skfp.fingerprints.AvalonFingerprint method) (skfp.fingerprints.E3FPFingerprint method) (skfp.fingerprints.ECFPFingerprint method) (skfp.fingerprints.ElectroShapeFingerprint method) (skfp.fingerprints.ERGFingerprint method) (skfp.fingerprints.EStateFingerprint method) (skfp.fingerprints.GETAWAYFingerprint method) (skfp.fingerprints.GhoseCrippenFingerprint method) (skfp.fingerprints.KlekotaRothFingerprint method) (skfp.fingerprints.LaggnerFingerprint method) (skfp.fingerprints.LayeredFingerprint method) (skfp.fingerprints.LingoFingerprint method) (skfp.fingerprints.MACCSFingerprint method) (skfp.fingerprints.MAPFingerprint method) (skfp.fingerprints.MHFPFingerprint method) (skfp.fingerprints.MordredFingerprint method) (skfp.fingerprints.MORSEFingerprint method) (skfp.fingerprints.MQNsFingerprint method) (skfp.fingerprints.PatternFingerprint method) (skfp.fingerprints.PharmacophoreFingerprint method) (skfp.fingerprints.PhysiochemicalPropertiesFingerprint method) (skfp.fingerprints.PubChemFingerprint method) (skfp.fingerprints.RDFFingerprint method) (skfp.fingerprints.RDKitFingerprint method) (skfp.fingerprints.SECFPFingerprint method) (skfp.fingerprints.TopologicalTorsionFingerprint method) (skfp.fingerprints.USRCATFingerprint method) (skfp.fingerprints.USRFingerprint method) (skfp.fingerprints.VSAFingerprint method) (skfp.fingerprints.WHIMFingerprint method) (skfp.model_selection.FingerprintEstimatorGridSearch method) (skfp.model_selection.FingerprintEstimatorRandomizedSearch method) (skfp.preprocessing.ConformerGenerator method) (skfp.preprocessing.MolFromAminoseqTransformer method) (skfp.preprocessing.MolFromInchiTransformer method) (skfp.preprocessing.MolFromSDFTransformer method) (skfp.preprocessing.MolFromSmilesTransformer method) (skfp.preprocessing.MolStandardizer method) (skfp.preprocessing.MolToInchiTransformer method) (skfp.preprocessing.MolToSDFTransformer method) (skfp.preprocessing.MolToSmilesTransformer method) get_params() (skfp.bases.BaseFilter method) (skfp.bases.BaseFingerprintTransformer method) (skfp.bases.BasePreprocessor method) (skfp.bases.BaseSubstructureFingerprint method) (skfp.filters.BeyondRo5Filter method) (skfp.filters.BMSFilter method) (skfp.filters.BrenkFilter method) (skfp.filters.FAF4DruglikeFilter method) (skfp.filters.FAF4LeadlikeFilter method) (skfp.filters.GhoseFilter method) (skfp.filters.GlaxoFilter method) (skfp.filters.GSKFilter method) (skfp.filters.HaoFilter method) (skfp.filters.InpharmaticaFilter method) (skfp.filters.LINTFilter method) (skfp.filters.LipinskiFilter method) (skfp.filters.MLSMRFilter method) (skfp.filters.MolecularWeightFilter method) (skfp.filters.NIBRFilter method) (skfp.filters.NIHFilter method) (skfp.filters.OpreaFilter method) (skfp.filters.PAINSFilter method) (skfp.filters.PfizerFilter method) (skfp.filters.REOSFilter method) (skfp.filters.RuleOfFourFilter method) (skfp.filters.RuleOfThreeFilter method) (skfp.filters.RuleOfTwoFilter method) (skfp.filters.RuleOfVeberFilter method) (skfp.filters.RuleOfXuFilter method) (skfp.filters.SureChEMBLFilter method) (skfp.filters.TiceHerbicidesFilter method) (skfp.filters.TiceInsecticidesFilter method) (skfp.filters.ValenceDiscoveryFilter method) (skfp.filters.ZINCBasicFilter method) (skfp.filters.ZINCDruglikeFilter method) (skfp.fingerprints.AtomPairFingerprint method) (skfp.fingerprints.AutocorrFingerprint method) (skfp.fingerprints.AvalonFingerprint method) (skfp.fingerprints.E3FPFingerprint method) (skfp.fingerprints.ECFPFingerprint method) (skfp.fingerprints.ElectroShapeFingerprint method) (skfp.fingerprints.ERGFingerprint method) (skfp.fingerprints.EStateFingerprint method) (skfp.fingerprints.GETAWAYFingerprint method) (skfp.fingerprints.GhoseCrippenFingerprint method) (skfp.fingerprints.KlekotaRothFingerprint method) (skfp.fingerprints.LaggnerFingerprint method) (skfp.fingerprints.LayeredFingerprint method) (skfp.fingerprints.LingoFingerprint method) (skfp.fingerprints.MACCSFingerprint method) (skfp.fingerprints.MAPFingerprint method) (skfp.fingerprints.MHFPFingerprint method) (skfp.fingerprints.MordredFingerprint method) (skfp.fingerprints.MORSEFingerprint method) (skfp.fingerprints.MQNsFingerprint method) (skfp.fingerprints.PatternFingerprint method) (skfp.fingerprints.PharmacophoreFingerprint method) (skfp.fingerprints.PhysiochemicalPropertiesFingerprint method) (skfp.fingerprints.PubChemFingerprint method) (skfp.fingerprints.RDFFingerprint method) (skfp.fingerprints.RDKitFingerprint method) (skfp.fingerprints.SECFPFingerprint method) (skfp.fingerprints.TopologicalTorsionFingerprint method) (skfp.fingerprints.USRCATFingerprint method) (skfp.fingerprints.USRFingerprint method) (skfp.fingerprints.VSAFingerprint method) (skfp.fingerprints.WHIMFingerprint method) (skfp.model_selection.FingerprintEstimatorGridSearch method) (skfp.model_selection.FingerprintEstimatorRandomizedSearch method) (skfp.preprocessing.ConformerGenerator method) (skfp.preprocessing.MolFromAminoseqTransformer method) (skfp.preprocessing.MolFromInchiTransformer method) (skfp.preprocessing.MolFromSDFTransformer method) (skfp.preprocessing.MolFromSmilesTransformer method) (skfp.preprocessing.MolStandardizer method) (skfp.preprocessing.MolToInchiTransformer method) (skfp.preprocessing.MolToSDFTransformer method) (skfp.preprocessing.MolToSmilesTransformer method) GETAWAYFingerprint (class in skfp.fingerprints) GhoseCrippenFingerprint (class in skfp.fingerprints) GhoseFilter (class in skfp.filters) GlaxoFilter (class in skfp.filters) GSKFilter (class in skfp.filters) H HaoFilter (class in skfp.filters) I InpharmaticaFilter (class in skfp.filters) K KlekotaRothFingerprint (class in skfp.fingerprints) L LaggnerFingerprint (class in skfp.fingerprints) LayeredFingerprint (class in skfp.fingerprints) LingoFingerprint (class in skfp.fingerprints) LINTFilter (class in skfp.filters) LipinskiFilter (class in skfp.filters) load_bace() (in module skfp.datasets.moleculenet) load_bbbp() (in module skfp.datasets.moleculenet) load_clintox() (in module skfp.datasets.moleculenet) load_esol() (in module skfp.datasets.moleculenet) load_freesolv() (in module skfp.datasets.moleculenet) load_hiv() (in module skfp.datasets.moleculenet) load_lipophilicity() (in module skfp.datasets.moleculenet) load_lrgb_mol_benchmark() (in module skfp.datasets.lrgb) load_lrgb_mol_splits() (in module skfp.datasets.lrgb) load_moleculenet_benchmark() (in module skfp.datasets.moleculenet) load_muv() (in module skfp.datasets.moleculenet) load_ogb_splits() (in module skfp.datasets.moleculenet) load_pcba() (in module skfp.datasets.moleculenet) load_peptides_func() (in module skfp.datasets.lrgb) load_peptides_struct() (in module skfp.datasets.lrgb) load_sider() (in module skfp.datasets.moleculenet) load_tox21() (in module skfp.datasets.moleculenet) load_toxcast() (in module skfp.datasets.moleculenet) M MACCSFingerprint (class in skfp.fingerprints) MAPFingerprint (class in skfp.fingerprints) maxmin_train_test_split() (in module skfp.model_selection) maxmin_train_valid_test_split() (in module skfp.model_selection) MHFPFingerprint (class in skfp.fingerprints) MLSMRFilter (class in skfp.filters) module skfp.bases skfp.datasets.lrgb skfp.datasets.moleculenet skfp.distances skfp.filters skfp.fingerprints skfp.metrics skfp.model_selection skfp.preprocessing skfp.utils MolecularWeightFilter (class in skfp.filters) MolFromAminoseqTransformer (class in skfp.preprocessing) MolFromInchiTransformer (class in skfp.preprocessing) MolFromSDFTransformer (class in skfp.preprocessing) MolFromSmilesTransformer (class in skfp.preprocessing) MolStandardizer (class in skfp.preprocessing) MolToInchiTransformer (class in skfp.preprocessing) MolToSDFTransformer (class in skfp.preprocessing) MolToSmilesTransformer (class in skfp.preprocessing) MordredFingerprint (class in skfp.fingerprints) MORSEFingerprint (class in skfp.fingerprints) MQNsFingerprint (class in skfp.fingerprints) multioutput_accuracy_score() (in module skfp.metrics) multioutput_auprc_score() (in module skfp.metrics) multioutput_auroc_score() (in module skfp.metrics) multioutput_balanced_accuracy_score() (in module skfp.metrics) multioutput_cohen_kappa_score() (in module skfp.metrics) multioutput_f1_score() (in module skfp.metrics) multioutput_matthews_corr_coef() (in module skfp.metrics) multioutput_mean_absolute_error() (in module skfp.metrics) multioutput_mean_squared_error() (in module skfp.metrics) multioutput_precision_score() (in module skfp.metrics) multioutput_recall_score() (in module skfp.metrics) multioutput_root_mean_squared_error() (in module skfp.metrics) N n_features_out (skfp.bases.BaseSubstructureFingerprint attribute) (skfp.fingerprints.AtomPairFingerprint attribute) (skfp.fingerprints.AutocorrFingerprint attribute) (skfp.fingerprints.AvalonFingerprint attribute) (skfp.fingerprints.E3FPFingerprint attribute) (skfp.fingerprints.ECFPFingerprint attribute) (skfp.fingerprints.ElectroShapeFingerprint attribute) (skfp.fingerprints.ERGFingerprint attribute) (skfp.fingerprints.EStateFingerprint attribute) (skfp.fingerprints.GETAWAYFingerprint attribute) (skfp.fingerprints.GhoseCrippenFingerprint attribute) (skfp.fingerprints.KlekotaRothFingerprint attribute) (skfp.fingerprints.LaggnerFingerprint attribute) (skfp.fingerprints.LayeredFingerprint attribute) (skfp.fingerprints.LingoFingerprint attribute) (skfp.fingerprints.MACCSFingerprint attribute) (skfp.fingerprints.MAPFingerprint attribute) (skfp.fingerprints.MHFPFingerprint attribute) (skfp.fingerprints.MordredFingerprint attribute) (skfp.fingerprints.MORSEFingerprint attribute) (skfp.fingerprints.MQNsFingerprint attribute) (skfp.fingerprints.PatternFingerprint attribute) (skfp.fingerprints.PharmacophoreFingerprint attribute) (skfp.fingerprints.PhysiochemicalPropertiesFingerprint attribute) (skfp.fingerprints.PubChemFingerprint attribute) (skfp.fingerprints.RDFFingerprint attribute) (skfp.fingerprints.RDKitFingerprint attribute) (skfp.fingerprints.SECFPFingerprint attribute) (skfp.fingerprints.TopologicalTorsionFingerprint attribute) (skfp.fingerprints.USRCATFingerprint attribute) (skfp.fingerprints.USRFingerprint attribute) (skfp.fingerprints.VSAFingerprint attribute) (skfp.fingerprints.WHIMFingerprint attribute) NIBRFilter (class in skfp.filters) NIHFilter (class in skfp.filters) no_rdkit_logs() (in module skfp.utils) O OpreaFilter (class in skfp.filters) P PAINSFilter (class in skfp.filters) PatternFingerprint (class in skfp.fingerprints) PfizerFilter (class in skfp.filters) PharmacophoreFingerprint (class in skfp.fingerprints) PhysiochemicalPropertiesFingerprint (class in skfp.fingerprints) PubChemFingerprint (class in skfp.fingerprints) R randomized_scaffold_train_test_split() (in module skfp.model_selection) randomized_scaffold_train_valid_test_split() (in module skfp.model_selection) RDFFingerprint (class in skfp.fingerprints) RDKitFingerprint (class in skfp.fingerprints) REOSFilter (class in skfp.filters) require_mols_with_conf_ids() (in module skfp.utils) requires_conformers (skfp.bases.BaseSubstructureFingerprint attribute) (skfp.fingerprints.AtomPairFingerprint attribute) (skfp.fingerprints.AutocorrFingerprint attribute) (skfp.fingerprints.AvalonFingerprint attribute) (skfp.fingerprints.E3FPFingerprint attribute) (skfp.fingerprints.ECFPFingerprint attribute) (skfp.fingerprints.ElectroShapeFingerprint attribute) (skfp.fingerprints.ERGFingerprint attribute) (skfp.fingerprints.EStateFingerprint attribute) (skfp.fingerprints.GETAWAYFingerprint attribute) (skfp.fingerprints.GhoseCrippenFingerprint attribute) (skfp.fingerprints.KlekotaRothFingerprint attribute) (skfp.fingerprints.LaggnerFingerprint attribute) (skfp.fingerprints.LayeredFingerprint attribute) (skfp.fingerprints.MACCSFingerprint attribute) (skfp.fingerprints.MAPFingerprint attribute) (skfp.fingerprints.MHFPFingerprint attribute) (skfp.fingerprints.MordredFingerprint attribute) (skfp.fingerprints.MORSEFingerprint attribute) (skfp.fingerprints.MQNsFingerprint attribute) (skfp.fingerprints.PatternFingerprint attribute) (skfp.fingerprints.PharmacophoreFingerprint attribute) (skfp.fingerprints.PhysiochemicalPropertiesFingerprint attribute) (skfp.fingerprints.PubChemFingerprint attribute) (skfp.fingerprints.RDFFingerprint attribute) (skfp.fingerprints.RDKitFingerprint attribute) (skfp.fingerprints.SECFPFingerprint attribute) (skfp.fingerprints.TopologicalTorsionFingerprint attribute) (skfp.fingerprints.USRCATFingerprint attribute) (skfp.fingerprints.USRFingerprint attribute) (skfp.fingerprints.VSAFingerprint attribute) (skfp.fingerprints.WHIMFingerprint attribute) rie_score() (in module skfp.metrics) RuleOfFourFilter (class in skfp.filters) RuleOfThreeFilter (class in skfp.filters) RuleOfTwoFilter (class in skfp.filters) RuleOfVeberFilter (class in skfp.filters) RuleOfXuFilter (class in skfp.filters) run_in_parallel() (in module skfp.utils) S scaffold_train_test_split() (in module skfp.model_selection) scaffold_train_valid_test_split() (in module skfp.model_selection) SECFPFingerprint (class in skfp.fingerprints) set_output() (skfp.bases.BaseFilter method) (skfp.bases.BaseFingerprintTransformer method) (skfp.bases.BasePreprocessor method) (skfp.bases.BaseSubstructureFingerprint method) (skfp.filters.BeyondRo5Filter method) (skfp.filters.BMSFilter method) (skfp.filters.BrenkFilter method) (skfp.filters.FAF4DruglikeFilter method) (skfp.filters.FAF4LeadlikeFilter method) (skfp.filters.GhoseFilter method) (skfp.filters.GlaxoFilter method) (skfp.filters.GSKFilter method) (skfp.filters.HaoFilter method) (skfp.filters.InpharmaticaFilter method) (skfp.filters.LINTFilter method) (skfp.filters.LipinskiFilter method) (skfp.filters.MLSMRFilter method) (skfp.filters.MolecularWeightFilter method) (skfp.filters.NIBRFilter method) (skfp.filters.NIHFilter method) (skfp.filters.OpreaFilter method) (skfp.filters.PAINSFilter method) (skfp.filters.PfizerFilter method) (skfp.filters.REOSFilter method) (skfp.filters.RuleOfFourFilter method) (skfp.filters.RuleOfThreeFilter method) (skfp.filters.RuleOfTwoFilter method) (skfp.filters.RuleOfVeberFilter method) (skfp.filters.RuleOfXuFilter method) (skfp.filters.SureChEMBLFilter method) (skfp.filters.TiceHerbicidesFilter method) (skfp.filters.TiceInsecticidesFilter method) (skfp.filters.ValenceDiscoveryFilter method) (skfp.filters.ZINCBasicFilter method) (skfp.filters.ZINCDruglikeFilter method) (skfp.fingerprints.AtomPairFingerprint method) (skfp.fingerprints.AutocorrFingerprint method) (skfp.fingerprints.AvalonFingerprint method) (skfp.fingerprints.E3FPFingerprint method) (skfp.fingerprints.ECFPFingerprint method) (skfp.fingerprints.ElectroShapeFingerprint method) (skfp.fingerprints.ERGFingerprint method) (skfp.fingerprints.EStateFingerprint method) (skfp.fingerprints.GETAWAYFingerprint method) (skfp.fingerprints.GhoseCrippenFingerprint method) (skfp.fingerprints.KlekotaRothFingerprint method) (skfp.fingerprints.LaggnerFingerprint method) (skfp.fingerprints.LayeredFingerprint method) (skfp.fingerprints.LingoFingerprint method) (skfp.fingerprints.MACCSFingerprint method) (skfp.fingerprints.MAPFingerprint method) (skfp.fingerprints.MHFPFingerprint method) (skfp.fingerprints.MordredFingerprint method) (skfp.fingerprints.MORSEFingerprint method) (skfp.fingerprints.MQNsFingerprint method) (skfp.fingerprints.PatternFingerprint method) (skfp.fingerprints.PharmacophoreFingerprint method) (skfp.fingerprints.PhysiochemicalPropertiesFingerprint method) (skfp.fingerprints.PubChemFingerprint method) (skfp.fingerprints.RDFFingerprint method) (skfp.fingerprints.RDKitFingerprint method) (skfp.fingerprints.SECFPFingerprint method) (skfp.fingerprints.TopologicalTorsionFingerprint method) (skfp.fingerprints.USRCATFingerprint method) (skfp.fingerprints.USRFingerprint method) (skfp.fingerprints.VSAFingerprint method) (skfp.fingerprints.WHIMFingerprint method) (skfp.preprocessing.ConformerGenerator method) (skfp.preprocessing.MolFromAminoseqTransformer method) (skfp.preprocessing.MolFromInchiTransformer method) (skfp.preprocessing.MolFromSDFTransformer method) (skfp.preprocessing.MolFromSmilesTransformer method) (skfp.preprocessing.MolStandardizer method) (skfp.preprocessing.MolToInchiTransformer method) (skfp.preprocessing.MolToSDFTransformer method) (skfp.preprocessing.MolToSmilesTransformer method) set_params() (skfp.bases.BaseFilter method) (skfp.bases.BaseFingerprintTransformer method) (skfp.bases.BasePreprocessor method) (skfp.bases.BaseSubstructureFingerprint method) (skfp.filters.BeyondRo5Filter method) (skfp.filters.BMSFilter method) (skfp.filters.BrenkFilter method) (skfp.filters.FAF4DruglikeFilter method) (skfp.filters.FAF4LeadlikeFilter method) (skfp.filters.GhoseFilter method) (skfp.filters.GlaxoFilter method) (skfp.filters.GSKFilter method) (skfp.filters.HaoFilter method) (skfp.filters.InpharmaticaFilter method) (skfp.filters.LINTFilter method) (skfp.filters.LipinskiFilter method) (skfp.filters.MLSMRFilter method) (skfp.filters.MolecularWeightFilter method) (skfp.filters.NIBRFilter method) (skfp.filters.NIHFilter method) (skfp.filters.OpreaFilter method) (skfp.filters.PAINSFilter method) (skfp.filters.PfizerFilter method) (skfp.filters.REOSFilter method) (skfp.filters.RuleOfFourFilter method) (skfp.filters.RuleOfThreeFilter method) (skfp.filters.RuleOfTwoFilter method) (skfp.filters.RuleOfVeberFilter method) (skfp.filters.RuleOfXuFilter method) (skfp.filters.SureChEMBLFilter method) (skfp.filters.TiceHerbicidesFilter method) (skfp.filters.TiceInsecticidesFilter method) (skfp.filters.ValenceDiscoveryFilter method) (skfp.filters.ZINCBasicFilter method) (skfp.filters.ZINCDruglikeFilter method) (skfp.fingerprints.AtomPairFingerprint method) (skfp.fingerprints.AutocorrFingerprint method) (skfp.fingerprints.AvalonFingerprint method) (skfp.fingerprints.E3FPFingerprint method) (skfp.fingerprints.ECFPFingerprint method) (skfp.fingerprints.ElectroShapeFingerprint method) (skfp.fingerprints.ERGFingerprint method) (skfp.fingerprints.EStateFingerprint method) (skfp.fingerprints.GETAWAYFingerprint method) (skfp.fingerprints.GhoseCrippenFingerprint method) (skfp.fingerprints.KlekotaRothFingerprint method) (skfp.fingerprints.LaggnerFingerprint method) (skfp.fingerprints.LayeredFingerprint method) (skfp.fingerprints.LingoFingerprint method) (skfp.fingerprints.MACCSFingerprint method) (skfp.fingerprints.MAPFingerprint method) (skfp.fingerprints.MHFPFingerprint method) (skfp.fingerprints.MordredFingerprint method) (skfp.fingerprints.MORSEFingerprint method) (skfp.fingerprints.MQNsFingerprint method) (skfp.fingerprints.PatternFingerprint method) (skfp.fingerprints.PharmacophoreFingerprint method) (skfp.fingerprints.PhysiochemicalPropertiesFingerprint method) (skfp.fingerprints.PubChemFingerprint method) (skfp.fingerprints.RDFFingerprint method) (skfp.fingerprints.RDKitFingerprint method) (skfp.fingerprints.SECFPFingerprint method) (skfp.fingerprints.TopologicalTorsionFingerprint method) (skfp.fingerprints.USRCATFingerprint method) (skfp.fingerprints.USRFingerprint method) (skfp.fingerprints.VSAFingerprint method) (skfp.fingerprints.WHIMFingerprint method) (skfp.model_selection.FingerprintEstimatorGridSearch method) (skfp.model_selection.FingerprintEstimatorRandomizedSearch method) (skfp.preprocessing.ConformerGenerator method) (skfp.preprocessing.MolFromAminoseqTransformer method) (skfp.preprocessing.MolFromInchiTransformer method) (skfp.preprocessing.MolFromSDFTransformer method) (skfp.preprocessing.MolFromSmilesTransformer method) (skfp.preprocessing.MolStandardizer method) (skfp.preprocessing.MolToInchiTransformer method) (skfp.preprocessing.MolToSDFTransformer method) (skfp.preprocessing.MolToSmilesTransformer method) set_transform_request() (skfp.bases.BaseFilter method) (skfp.bases.BaseFingerprintTransformer method) (skfp.bases.BasePreprocessor method) (skfp.bases.BaseSubstructureFingerprint method) (skfp.filters.BeyondRo5Filter method) (skfp.filters.BMSFilter method) (skfp.filters.BrenkFilter method) (skfp.filters.FAF4DruglikeFilter method) (skfp.filters.FAF4LeadlikeFilter method) (skfp.filters.GhoseFilter method) (skfp.filters.GlaxoFilter method) (skfp.filters.GSKFilter method) (skfp.filters.HaoFilter method) (skfp.filters.InpharmaticaFilter method) (skfp.filters.LINTFilter method) (skfp.filters.LipinskiFilter method) (skfp.filters.MLSMRFilter method) (skfp.filters.MolecularWeightFilter method) (skfp.filters.NIBRFilter method) (skfp.filters.NIHFilter method) (skfp.filters.OpreaFilter method) (skfp.filters.PAINSFilter method) (skfp.filters.PfizerFilter method) (skfp.filters.REOSFilter method) (skfp.filters.RuleOfFourFilter method) (skfp.filters.RuleOfThreeFilter method) (skfp.filters.RuleOfTwoFilter method) (skfp.filters.RuleOfVeberFilter method) (skfp.filters.RuleOfXuFilter method) (skfp.filters.SureChEMBLFilter method) (skfp.filters.TiceHerbicidesFilter method) (skfp.filters.TiceInsecticidesFilter method) (skfp.filters.ValenceDiscoveryFilter method) (skfp.filters.ZINCBasicFilter method) (skfp.filters.ZINCDruglikeFilter method) (skfp.fingerprints.AtomPairFingerprint method) (skfp.fingerprints.AutocorrFingerprint method) (skfp.fingerprints.AvalonFingerprint method) (skfp.fingerprints.E3FPFingerprint method) (skfp.fingerprints.ECFPFingerprint method) (skfp.fingerprints.ElectroShapeFingerprint method) (skfp.fingerprints.ERGFingerprint method) (skfp.fingerprints.EStateFingerprint method) (skfp.fingerprints.GETAWAYFingerprint method) (skfp.fingerprints.GhoseCrippenFingerprint method) (skfp.fingerprints.KlekotaRothFingerprint method) (skfp.fingerprints.LaggnerFingerprint method) (skfp.fingerprints.LayeredFingerprint method) (skfp.fingerprints.LingoFingerprint method) (skfp.fingerprints.MACCSFingerprint method) (skfp.fingerprints.MAPFingerprint method) (skfp.fingerprints.MHFPFingerprint method) (skfp.fingerprints.MordredFingerprint method) (skfp.fingerprints.MORSEFingerprint method) (skfp.fingerprints.MQNsFingerprint method) (skfp.fingerprints.PatternFingerprint method) (skfp.fingerprints.PharmacophoreFingerprint method) (skfp.fingerprints.PhysiochemicalPropertiesFingerprint method) (skfp.fingerprints.PubChemFingerprint method) (skfp.fingerprints.RDFFingerprint method) (skfp.fingerprints.RDKitFingerprint method) (skfp.fingerprints.SECFPFingerprint method) (skfp.fingerprints.TopologicalTorsionFingerprint method) (skfp.fingerprints.USRCATFingerprint method) (skfp.fingerprints.USRFingerprint method) (skfp.fingerprints.VSAFingerprint method) (skfp.fingerprints.WHIMFingerprint method) (skfp.preprocessing.ConformerGenerator method) (skfp.preprocessing.MolFromAminoseqTransformer method) (skfp.preprocessing.MolFromInchiTransformer method) (skfp.preprocessing.MolFromSDFTransformer method) (skfp.preprocessing.MolFromSmilesTransformer method) (skfp.preprocessing.MolStandardizer method) (skfp.preprocessing.MolToInchiTransformer method) (skfp.preprocessing.MolToSDFTransformer method) (skfp.preprocessing.MolToSmilesTransformer method) skfp.bases module skfp.datasets.lrgb module skfp.datasets.moleculenet module skfp.distances module skfp.filters module skfp.fingerprints module skfp.metrics module skfp.model_selection module skfp.preprocessing module skfp.utils module smiles_to_dicts() (skfp.fingerprints.LingoFingerprint method) spearman_correlation() (in module skfp.metrics) SureChEMBLFilter (class in skfp.filters) T tanimoto_binary_distance() (in module skfp.distances) tanimoto_binary_similarity() (in module skfp.distances) tanimoto_count_distance() (in module skfp.distances) tanimoto_count_similarity() (in module skfp.distances) TiceHerbicidesFilter (class in skfp.filters) TiceInsecticidesFilter (class in skfp.filters) TopologicalTorsionFingerprint (class in skfp.fingerprints) transform() (skfp.bases.BaseFilter method) (skfp.bases.BaseSubstructureFingerprint method) (skfp.filters.BeyondRo5Filter method) (skfp.filters.BMSFilter method) (skfp.filters.BrenkFilter method) (skfp.filters.FAF4DruglikeFilter method) (skfp.filters.FAF4LeadlikeFilter method) (skfp.filters.GhoseFilter method) (skfp.filters.GlaxoFilter method) (skfp.filters.GSKFilter method) (skfp.filters.HaoFilter method) (skfp.filters.InpharmaticaFilter method) (skfp.filters.LINTFilter method) (skfp.filters.LipinskiFilter method) (skfp.filters.MLSMRFilter method) (skfp.filters.MolecularWeightFilter method) (skfp.filters.NIBRFilter method) (skfp.filters.NIHFilter method) (skfp.filters.OpreaFilter method) (skfp.filters.PAINSFilter method) (skfp.filters.PfizerFilter method) (skfp.filters.REOSFilter method) (skfp.filters.RuleOfFourFilter method) (skfp.filters.RuleOfThreeFilter method) (skfp.filters.RuleOfTwoFilter method) (skfp.filters.RuleOfVeberFilter method) (skfp.filters.RuleOfXuFilter method) (skfp.filters.SureChEMBLFilter method) (skfp.filters.TiceHerbicidesFilter method) (skfp.filters.TiceInsecticidesFilter method) (skfp.filters.ValenceDiscoveryFilter method) (skfp.filters.ZINCBasicFilter method) (skfp.filters.ZINCDruglikeFilter method) (skfp.fingerprints.AtomPairFingerprint method) (skfp.fingerprints.AvalonFingerprint method) (skfp.fingerprints.E3FPFingerprint method) (skfp.fingerprints.ElectroShapeFingerprint method) (skfp.fingerprints.GhoseCrippenFingerprint method) (skfp.fingerprints.KlekotaRothFingerprint method) (skfp.fingerprints.LaggnerFingerprint method) (skfp.fingerprints.LingoFingerprint method) (skfp.fingerprints.MQNsFingerprint method) (skfp.fingerprints.TopologicalTorsionFingerprint method) (skfp.fingerprints.USRCATFingerprint method) (skfp.fingerprints.USRFingerprint method) (skfp.preprocessing.ConformerGenerator method) (skfp.preprocessing.MolFromAminoseqTransformer method) (skfp.preprocessing.MolFromInchiTransformer method) (skfp.preprocessing.MolFromSDFTransformer method) (skfp.preprocessing.MolFromSmilesTransformer method) (skfp.preprocessing.MolStandardizer method) transform_x_y() (skfp.bases.BaseFilter method) (skfp.filters.BeyondRo5Filter method) (skfp.filters.BMSFilter method) (skfp.filters.BrenkFilter method) (skfp.filters.FAF4DruglikeFilter method) (skfp.filters.FAF4LeadlikeFilter method) (skfp.filters.GhoseFilter method) (skfp.filters.GlaxoFilter method) (skfp.filters.GSKFilter method) (skfp.filters.HaoFilter method) (skfp.filters.InpharmaticaFilter method) (skfp.filters.LINTFilter method) (skfp.filters.LipinskiFilter method) (skfp.filters.MLSMRFilter method) (skfp.filters.MolecularWeightFilter method) (skfp.filters.NIBRFilter method) (skfp.filters.NIHFilter method) (skfp.filters.OpreaFilter method) (skfp.filters.PAINSFilter method) (skfp.filters.PfizerFilter method) (skfp.filters.REOSFilter method) (skfp.filters.RuleOfFourFilter method) (skfp.filters.RuleOfThreeFilter method) (skfp.filters.RuleOfTwoFilter method) (skfp.filters.RuleOfVeberFilter method) (skfp.filters.RuleOfXuFilter method) (skfp.filters.SureChEMBLFilter method) (skfp.filters.TiceHerbicidesFilter method) (skfp.filters.TiceInsecticidesFilter method) (skfp.filters.ValenceDiscoveryFilter method) (skfp.filters.ZINCBasicFilter method) (skfp.filters.ZINCDruglikeFilter method) (skfp.fingerprints.ElectroShapeFingerprint method) (skfp.fingerprints.USRCATFingerprint method) (skfp.fingerprints.USRFingerprint method) (skfp.preprocessing.ConformerGenerator method) (skfp.preprocessing.MolFromInchiTransformer method) (skfp.preprocessing.MolFromSmilesTransformer method) U USRCATFingerprint (class in skfp.fingerprints) USRFingerprint (class in skfp.fingerprints) V ValenceDiscoveryFilter (class in skfp.filters) VSAFingerprint (class in skfp.fingerprints) W WHIMFingerprint (class in skfp.fingerprints) Z ZINCBasicFilter (class in skfp.filters) ZINCDruglikeFilter (class in skfp.filters)